Package: scAnnotate
Type: Package
Title: An Automated Cell Type Annotation Tool for Single-Cell
        RNA-Sequencing Data
Version: 0.3
Authors@R: c(person("Xiangling", "Ji",role="aut"),
       person("Danielle","Tsao",role="aut"),
       person("Kailun","Bai",role="ctb"),
       person("Min","Tsao",role="aut"),
       person("Li","Xing",role="aut"),
       person("Xuekui","Zhang",role=c("aut","cre"), email="xuekui@uvic.ca"))
Description: An entirely data-driven cell type annotation tools, which
        requires training data to learn the classifier, but not
        biological knowledge to make subjective decisions. It consists
        of three steps: preprocessing training and test data, model
        fitting on training data, and cell classification on test data.
        See Xiangling Ji,Danielle Tsao, Kailun Bai, Min Tsao, Li Xing,
        Xuekui Zhang.(2022)<doi:10.1101/2022.02.19.481159> for more
        details.
Depends: R(>= 4.0.0)
License: GPL-3
URL: https://doi.org/10.1101/2022.02.19.481159
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Suggests: knitr, testthat (>= 3.0.0), rmarkdown
VignetteBuilder: knitr
Imports: glmnet, stats, Seurat (>= 5.0.1), harmony, SeuratObject
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-04-21 05:20:37 UTC; root
Author: Xiangling Ji [aut], Danielle Tsao [aut], Kailun Bai [ctb], Min
        Tsao [aut], Li Xing [aut], Xuekui Zhang [aut, cre]
Maintainer: Xuekui Zhang <xuekui@uvic.ca>
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://ubcxzhang.r-universe.dev
Date/Publication: 2024-03-14 02:30:56 UTC
RemoteUrl: https://github.com/cran/scAnnotate
RemoteRef: HEAD
RemoteSha: df9145d8a8b3a8d6bb263919bd672b9bdd363046